Connotea: timread's bookmarks matching tag Bioinformatics

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timread's bookmarks matching tag Bioinformatics

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Sequence Ontology

www.sequenceontology.org

Posted by timread and 1 other to Bioinformatics annotation ontology on Tue May 22 2007 at 17:55 UTC | info | related

The Gaggle: an open-source software system for int...[BMC Bioinformatics. 2006] - PubMed Result

The Gaggle an opensource software system for integrating bioinformatics software and data sources

Paul Shannon et al.

BMC bioinformatics [electronic resource]. 7 (1), 176 (28 Mar 2006)

info:pmid/16569235 | info:doi/10.1186/1471-2105-7-176

Posted by timread and 7 others to systems Bioinformatics on Wed May 09 2007 at 13:54 UTC | info | related

Highways of gene sharing in prokaryotes

Robert Beiko, Timothy Harlow, and Mark Ragan

Proceedings of the National Academy of Sciences 102 (40), 14332-7 (04 Oct 2005)

info:doi/10.1073/pnas.0504068102

Posted by timread and 2 others to HGT Bioinformatics on Tue Dec 05 2006 at 22:54 UTC | info | related

Operon Prediction in Sequenced Bacterial Genomes Without Experimental Information.

Nicholas Bergman et al.

Appl Environ Microbiol, (22 Nov 2006)

info:pmid/17122389 | info:doi/10.1128/AEM.01686-06

Posted by timread to anthracis Bioinformatics on Fri Dec 01 2006 at 22:49 UTC | info | related

FFAS03: a server for profile-profile sequence alignments -- Jaroszewski et al. 33 (Supplement 2): W284 -- Nucleic Acids Research

nar.oxfordjournals.org

Posted by timread to Bioinformatics on Thu Nov 09 2006 at 14:12 UTC | info | related

The COG database: an updated version includes eukaryotes.

Roman Tatusov et al.

BMC bioinformatics [electronic resource]. 4, 41 (11 Sep 2003)

info:pmid/12969510 | info:doi/10.1186/1471-2105-4-41

Posted by timread and 7 others to bacteria Bioinformatics on Wed Nov 08 2006 at 20:30 UTC | info | related

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences -- Laslett and Canback 32 (1): 11 -- Nucleic Acids Research

nar.oxfordjournals.org

Posted by timread to tmRNA Bioinformatics on Tue Nov 07 2006 at 19:16 UTC | info | related

Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes -- Uchiyama 34 (2): 647 -- Nucleic Acids Research

nar.oxfordjournals.org

Posted by timread to Blast clustering Bioinformatics on Fri Oct 13 2006 at 20:45 UTC | info | related

MCL - an algorithm for clustering graphs

micans.org

Posted by timread and 3 others to Blast clustering Bioinformatics on Fri Oct 13 2006 at 20:26 UTC | info | related

NCBI Prokaryotic Genomes Automatic Annotation Pipeline (PGAAP)

www.ncbi.nlm.nih.gov

Posted by timread to website NCBI genome Bioinformatics annotation on Fri Oct 06 2006 at 18:09 UTC | info | related

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