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Adaptive Evolution of Conserved Noncoding Elements in Mammals

Su Yeon Kim and Jonathan K. Pritchard

PLoS Genetics 3 (9), e147 (01 Sep 2007)

info:doi/10.1371/journal.pgen.0030147

Posted by tanya and 4 others to CNE Mammals Bioinformatics Conservation evolution on Mon Dec 10 2007 at 09:08 UTC | info | related

Close sequence comparisons are sufficient to identify human cis-regulatory elements

Shyam Prabhakar et al.

Genome research. 16 (7), 855-63 (Jul 2006)

info:pmid/16769978 | info:doi/10.1101/gr.4717506

Posted by tanya and 3 others to sequence generator cis-regulation Vertebrates Mammals human Bioinformatics Conservation evolution CNE on Sun Nov 25 2007 at 11:02 UTC | info | related

Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity

Conservation of RET regulatory function from human to zebrafish without sequence similarity

Shannon Fisher et al.

Science 312 (5771), 276-9 (14 Apr 2006)

info:doi/10.1126/science.1124070

Posted by tanya and 1 other to zfish regulatory elements Vertebrates enhancer Ret Conservation evolution on Sun Oct 28 2007 at 11:06 UTC | info | related

Deletion of Ultraconserved Elements Yields Viable Mice

Nadav Ahituv et al.

PLoS Biology 5 (9), 234 (01 Sep 2007)

info:doi/10.1371/journal.pbio.0050234

Posted by tanya and 8 others to deletion mouse Conservation evolution CNE on Wed Sep 26 2007 at 15:18 UTC | info | related

Transcriptional regulatory code of a eukaryotic genome

Christopher Harbison et al.

Nature 431 (7004), 99-104 (02 Sep 2004)

info:doi/10.1038/nature02800

Posted by tanya and 17 others to GRN motif discovery regulatory elements TFBS yeast Conservation CHIP-chip genome on Wed Aug 22 2007 at 11:21 UTC | info | related

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

Nature Genetics 39 (6), 730 (2007)

info:doi/10.1038/ng2047

Posted by tanya and 10 others to cis-regulation regulatory elements Mammals transcription mouse human Conservation evolution on Thu Jun 28 2007 at 08:01 UTC | info | related

Detecting non-coding selective pressure in coding regions.

Hui Chen and Mathieu Blanchette

BMC evolutionary biology 7 Suppl 1, 9 (2007)

info:pmid/17288582 | info:doi/10.1186/1471-2148-7-S1-S9

Posted by tanya and 3 others to cis-regulation Bioinformatics Conservation CNE on Tue Feb 13 2007 at 23:16 UTC | info | related

Evolution of alternative transcriptional circuits with identical logic

Annie Tsong et al.

Nature 443 (7110), 415-20 (28 Sep 2006)

info:doi/10.1038/nature05099

Posted by tanya and 7 others with 1 comment to GRN cis-regulation regulatory elements TFBS mating yeast Conservation evolution on Wed Nov 22 2006 at 10:56 UTC | info | related

Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees

Saurabh Sinha et al.

Proceedings of the National Academy of Sciences 103 (44), 16352-7 (31 Oct 2006)

info:doi/10.1073/pnas.0607448103

Posted by tanya and 1 other to Honey bee PWM promoters TFBS Drosophila Bioinformatics Conservation evolution on Tue Nov 21 2006 at 11:56 UTC | info | related

http://bioinformatics.oxfordjournals.org/cgi/content/full/22/23/2858

Posted by tanya to cis-regulation regulatory elements TFBS Drosophila Bioinformatics Conservation on Mon Nov 20 2006 at 10:58 UTC | info | related

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