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Nucleosome organization in the Drosophila genome.

Travis Mavrich et al.

Nature 453 (7193), 358-62 (15 May 2008)

info:pmid/18408708 | info:doi/10.1038/nature06929

Posted by smount and 4 others to motifs sequencing Drosophila nucleosome on Sat Jul 26 2008 at 18:34 UTC | info | related

A machine learning strategy to identify candidate binding sites in human protein-coding sequence.

Thomas Down, Bernard Leong, and Tim J P Hubbard

BMC bioinformatics 7, 419 (2006)

info:pmid/17002805 | info:doi/10.1186/1471-2105-7-419

Posted by smount to motifs machine_learning ESE on Tue Mar 18 2008 at 19:41 UTC | info | related

Distribution and characterization of regulatory elements in the human genome.

Jacek Majewski and Jurg Ott

Genome research 12 (12), 1827-36 (Dec 2002)

info:pmid/12466286 | info:doi/10.1101/gr.606402

Posted by smount and 1 other to G-rich genomics comparative motifs splicing on Tue Feb 13 2007 at 22:07 UTC | info | related

A combinatorial code for splicing silencing: UAGG and GGGG motifs.

Kyoungha Han et al.

PLoS biology 3 (5), 158 (May 2005)

info:pmid/15828859 | info:doi/10.1371/journal.pbio.0030158

Posted by smount and 1 other to hnRNP ESS motifs splicing G-rich on Tue Feb 13 2007 at 20:44 UTC | info | related

Inference of splicing regulatory activities by sequence neighborhood analysis.

Michael Stadler et al.

PLoS genetics 2 (11), 191 (24 Nov 2006)

info:pmid/17121466 | info:doi/10.1371/journal.pgen.0020191

Posted by smount and 2 others to motifs ESR labmtg on Tue Feb 13 2007 at 20:00 UTC | info | related

An intronic splicing enhancer binds U1 snRNPs to enhance splicing and select 5' splice sites.

A J McCullough and S M Berget

Molecular and cellular biology 20 (24), 9225-35 (Dec 2000)

info:pmid/11094074

Posted by smount to U1 motifs G-rich splicing on Tue Feb 13 2007 at 19:57 UTC | info | related

G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection.

A J McCullough and S M Berget

Molecular and cellular biology 17 (8), 4562-71 (Aug 1997)

info:pmid/9234714

Posted by smount to motifs G-rich splicing on Tue Feb 13 2007 at 19:43 UTC | info | related

Position-dependent repression and promotion of DQB1 intron 3 splicing by GGGG motifs.

Jana Královicová and Igor Vorechovsky

Journal of immunology (Baltimore, Md. : 1950) 176 (4), 2381-8 (15 Feb 2006)

info:pmid/16455996

Posted by smount to G-rich motifs splicing on Tue Feb 13 2007 at 19:42 UTC | info | related

Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation.

Guy Kol, Galit Lev-Maor, and Gil Ast

Human molecular genetics 14 (11), 1559-68 (01 Jun 2005)

info:pmid/15857856 | info:doi/10.1093/hmg/ddi164

Posted by smount to comparative motifs branch_site on Wed Dec 13 2006 at 15:39 UTC | info | related

Predictive Identification of Exonic Splicing Enhancers in Human Genes

William Fairbrother et al.

Science 297 (5583), 1007-13 (09 Aug 2002)

info:doi/10.1126/science.1073774

Posted by smount and 1 other to motifs ESE on Wed Dec 06 2006 at 23:10 UTC | info | related

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