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sailu's bookmarks matching tag motif
 
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PLoS Computational Biology: PhyloGibbs-MP: Module Prediction and Discriminative Motif-Finding by Gibbs Sampling
www.ploscompbiol.org
Posted by sailu to motif on Sat Aug 30 2008 at 16:48 UTC | info | related
 
Associating transcription factor-binding site motifs with target GO terms and target genes
Mikael Boden and Timothy Bailey
Nucleic Acids Research, (10 Jun 2008)
info:pmid/18544606 | info:doi/10.1093/nar/gkn374
Posted by sailu and 1 other to motif on Fri Jun 13 2008 at 15:40 UTC | info | related
 
W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data
Xin Chen et al.
Bioinformatics 24 (9), (01 May 2008)
info:pmid/18325926 | info:doi/10.1093/bioinformatics/btn088
Posted by sailu and 2 others to motif on Fri Apr 25 2008 at 15:20 UTC | info | related
 
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements
R Satija, L Pachter, and J Hein
Bioinformatics (Oxford, England) 24 (10), btn104v1 (18 Mar 2008)
info:pmid/18353788 | info:doi/10.1093/bioinformatics/btn104
Posted by sailu and 7 others with 1 comment to motif on Fri Mar 21 2008 at 14:47 UTC | info | related
 
A Hybrid Model for Robust Detection of Transcription Factor Binding Sites
Sumedha Gunewardena and Zhaolei Zhang
Bioinformatics, btm629v1 (09 Jan 2008)
info:pmid/18184687 | info:doi/10.1093/bioinformatics/btm629
Posted by sailu to motif on Fri Jan 11 2008 at 14:45 UTC | info | related
 
A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast
A nucleosomeguided map of transcription factor binding sites in yeast
Leelavati Narlikar, Raluca Gordân, and Alexander Hartemink
PLoS Computational Biology 3 (11), e215 (01 Nov 2007)
info:doi/10.1371/journal.pcbi.0030215
Posted by sailu and 1 other to motif on Sat Dec 01 2007 at 00:07 UTC | info | related
 
BioMed Central | Abstract | 1471-2105-8-418 | HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
www.biomedcentral.com
Posted by sailu to motif on Mon Oct 29 2007 at 13:08 UTC | info | related
 
Tree Gibbs Sampler: Identifying Conserved Motifs without Aligning Orthologous Sequences -- Cai et al., 10.1093/bioinformatics/btm282 -- Bioinformatics
bioinformatics.oxfordjournals.org
Posted by sailu to motif on Thu Jun 07 2007 at 13:49 UTC | info | related
 
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
Timothy Reddy, Charles Delisi, and Boris Shakhnovich
PLoS Computational Biology 3 (5), 90 (01 May 2007)
info:doi/10.1371/journal.pcbi.0030090
Posted by sailu and 11 others to motif on Fri May 11 2007 at 14:47 UTC | info | related
 
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
Timothy Reddy, Charles Delisi, and Boris Shakhnovich
PLoS Computational Biology preprint (2007), 90 (01 Apr 2007)
info:doi/10.1371/journal.pcbi.0030090.eor
Posted by sailu to motif on Fri Apr 13 2007 at 19:06 UTC | info | related

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