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From genomics to chemical genomics: new developments in KEGG.

Minoru Kanehisa et al.

Nucleic acids research. 34 (Database issue), D354-7 (01 Jan 2006)

info:pmid/16381885 | info:doi/10.1093/nar/gkj102

Posted by rdowell and 4 others to metabolism KEGG on Thu Apr 24 2008 at 19:47 UTC | info | related

KEGG for linking genomes to life and the environment.

Minoru Kanehisa et al.

Nucleic Acids Research 36 (Database issue), D480-4 (11 Jan 2008)

info:pmid/18077471 | info:doi/10.1093/nar/gkm882

Posted by rdowell and 1 other to metabolism KEGG on Thu Apr 24 2008 at 19:47 UTC | info | related

Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

Reconstruction and validation of Saccharomyces cerevisiae iND750 a fully compartmentalized genomescale metabolic model

Natalie Duarte, Markus Herrgard, and Bernhard Palsson

Genome research 14 (7), 1298-1309 (Jul 2004)

info:pmid/15197165 | info:doi/10.1101/gr.2250904

Posted by rdowell and 1 other with 1 comment to network yeast metabolism on Thu Apr 24 2008 at 19:23 UTC | info | related

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network.

Iman Famili et al.

Proceedings of the National Academy of Sciences of the United States of America. 100 (23), 13134-9 (11 Nov 2003)

info:pmid/14578455 | info:doi/10.1073/pnas.2235812100

Posted by rdowell and 2 others to stackit yeast network modeling metabolism on Thu Apr 24 2008 at 19:22 UTC | info | related

Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network

Jochen Förster et al.

Genome Research 13 (2), 244 (2003)

info:doi/10.1101/gr.234503

Posted by rdowell and 1 other to network yeast metabolism on Thu Apr 24 2008 at 19:22 UTC | info | related

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

Scott Becker et al.

Nat. Protocols 2 (3), 727-38 (Mar 2007)

info:doi/10.1038/nprot.2007.99

CORBA toolbox for FBA

Posted by rdowell to stackit tool metabolism on Mon Apr 21 2008 at 14:55 UTC | info | related

Systematic condition-dependent annotation of metabolic genes.

Tomer Shlomi et al.

Genome research 17 (11), 1626-33 (Nov 2007)

info:pmid/17895423 | info:doi/10.1101/gr.6678707

Posted by rdowell to metabolism yeast on Mon Mar 31 2008 at 17:48 UTC | info | related

Predicting synthetic rescues in metabolic networks

Adilson Motter et al.

Mol Syst Biol 4, (12 Feb 2008)

info:doi/10.1038/msb.2008.1

Posted by rdowell and 1 other to stackit synthetic-rescue network metabolism on Mon Mar 31 2008 at 17:45 UTC | info | related

Modular epistasis in yeast metabolism.

Daniel Segre et al.

Nature Genetics 37 (1), 77-83 (Jan 2005)

info:pmid/15592468 | info:doi/10.1038/ng1489

Posted by rdowell and 6 others with 1 comment to metabolism epistasis yeast on Mon Mar 31 2008 at 15:39 UTC | info | related

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