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The evolution of gene regulation by transcription factors and microRNAs.
Kevin Chen and Nikolaus Rajewsky
Nature reviews. Genetics 8 (2), 93-103 (Feb 2007)
info:pmid/17230196 | info:doi/10.1038/nrg1990
Posted by razor and 13 others to RNA noncoding motif evolution transcription on Sun Jul 15 2007 at 21:56 UTC | info | related
 
The evolutionary significance of cis-regulatory mutations.
Gregory Wray
Nature reviews. Genetics 8 (3), 206-16 (Mar 2007)
info:pmid/17304246 | info:doi/10.1038/nrg2063
Posted by razor and 7 others to noncoding motif evolution mutation transcription on Sun Jul 15 2007 at 21:55 UTC | info | related
 
Reconstructing dynamic regulatory maps.
Jason Ernst et al.
Molecular systems biology 3, 74 (2007)
info:pmid/17224918 | info:doi/10.1038/msb4100115
Posted by razor and 5 others to Saccharomyces sysbio on Sun Jul 15 2007 at 21:53 UTC | info | related
 
Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes.
Timothy Reddy et al.
Nucleic acids research 35 (3), 20 (2007)
info:pmid/17204484 | info:doi/10.1093/nar/gkl1062
Posted by razor to noncoding motif Promoter on Sun Jul 15 2007 at 21:51 UTC | info | related
 
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans.
Tanya Vavouri et al.
Genome biology 8 (2), 15 (2007)
info:pmid/17274809 | info:doi/10.1186/gb-2007-8-2-r15
Posted by razor and 7 others to motif Promoter noncoding genome on Sun Jul 15 2007 at 21:49 UTC | info | related
 
Both introns and long 3'-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants.
Sándor Kertész et al.
Nucleic acids research 34 (21), 6147-57 (2006)
info:pmid/17088291 | info:doi/10.1093/nar/gkl737
Posted by razor to UTR RNA plant on Sun Jul 15 2007 at 21:48 UTC | info | related
 
Mclip: motif detection based on cliques of gapped local profile-to-profile alignments.
Tancred Frickey and Georg Weiller
Bioinformatics (Oxford, England) 23 (4), 502-3 (15 Feb 2007)
info:pmid/17127680 | info:doi/10.1093/bioinformatics/btl601
Posted by razor to Software motif on Sun Jul 15 2007 at 21:46 UTC | info | related
 
In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae.
Rui Alves and Albert Sorribas
BMC systems biology 1, 10 (2007)
info:pmid/17408500 | info:doi/10.1186/1752-0509-1-10
Posted by razor and 2 others to sysbio Saccharomyces on Sun Jul 15 2007 at 21:45 UTC | info | related
 
High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes.
Noah Fahlgren et al.
PLoS ONE 2, 219 (2007)
info:pmid/17299599 | info:doi/10.1371/journal.pone.0000219
Posted by razor and 1 other to RNA Arabidopsis on Sun Jul 15 2007 at 21:42 UTC | info | related
 
High-throughput oncogene mutation profiling in human cancer.
Roman Thomas et al.
Nature genetics 39 (3), 347-51 (Mar 2007)
info:pmid/17293865 | info:doi/10.1038/ng1975
Posted by razor and 3 others to cancer mutation oncogene on Sun Jul 15 2007 at 21:41 UTC | info | related

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