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GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.
GOSim An Rpackage for computation of information theoretic GO similarities between terms and gene products
Holger Froehlich et al.
BMC Bioinformatics 8 (1), 166 (22 May 2007)
info:pmid/17519018 | info:doi/10.1186/1471-2105-8-166
Posted by nookland and 5 others to gene comparison GO on Tue May 06 2008 at 09:06 UTC | info | related
 
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs.
Jasmina Ponjavic, Chris P Ponting, and Gerton Lunter
Genome research 17 (5), 556-65 (01 May 2007)
info:pmid/17387145 | info:doi/10.1101/gr.6036807
Posted by nookland and 2 others to non coding RNA on Mon May 05 2008 at 16:30 UTC | info | related
 
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
Gabriela Loots and Ivan Ovcharenko
Bioinformatics (Oxford, England) 23 (1), 122-4 (01 Jan 2007)
info:pmid/17090579 | info:doi/10.1093/bioinformatics/btl546
Posted by nookland to motifs promoters cis regulation on Mon May 05 2008 at 16:13 UTC | info | related
 
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
Xun Gu and Kent Vander Velden
Bioinformatics (Oxford, England) 18 (3), 500-1 (Mar 2002)
info:pmid/11934757
Posted by nookland to protein distances protein families phylogeny on Mon Mar 31 2008 at 08:18 UTC | info | related
 
Evolution of gene sequence and gene expression are not correlated in yeast.
Itay Tirosh and Naama Barkai
Trends in genetics : TIG 24 (3), 109-13 (02 Feb 2008)
info:pmid/18249461 | info:doi/10.1016/j.tig.2007.12.004
Posted by nookland and 2 others to promoters genome duplication gene duplication on Fri Feb 29 2008 at 15:36 UTC | info | related
 
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates.
Itay Tirosh and Naama Barkai
Genome Biology 8 (4), R50 (05 Apr 2007)
info:pmid/17411427 | info:doi/10.1186/gb-2007-8-4-r50
Posted by nookland and 3 others to yeast genome duplication gene duplication on Fri Feb 29 2008 at 15:34 UTC | info | related
 
The Evolutionary Fate and Consequences of Duplicate Genes
Michael Lynch and John Conery
Science 290 (5494), 1151-5 (10 Nov 2000)
info:doi/10.1126/science.290.5494.1151
Posted by nookland and 4 others to genome duplication gene duplication on Mon Feb 18 2008 at 13:55 UTC | info | related
 
Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization
BMC Evolutionary Biology 8 (1), 43 (2008)
info:doi/10.1186/1471-2148-8-43
Posted by nookland and 1 other to ploidy genome duplication on Mon Feb 18 2008 at 13:54 UTC | info | related
 
Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models.
Wendy S W Wong and Rasmus Nielsen
Bioinformatics (Oxford, England) 23 (16), 2031-7 (15 Aug 2007)
info:pmid/17550911 | info:doi/10.1093/bioinformatics/btm299
Posted by nookland and 1 other to tools bioinformatic tools tf cis regulation on Fri Dec 07 2007 at 13:24 UTC | info | related
 
DNA binding sites: representation and discovery.
G D Stormo
Bioinformatics (Oxford, England) 16 (1), 16-23 (Jan 2000)
info:pmid/10812473
Posted by nookland and 1 other to bioinformatic tools tools tf on Fri Dec 07 2007 at 13:22 UTC | info | related

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