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mwhitesi's bookmarks matching tag ortholog
 
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Clustering of main orthologs for multiple genomes.
Zheng Fu and Tao Jiang
Journal of bioinformatics and computational biology 6 (3), 573-84 (Jun 2008)
info:pmid/18574863
Posted by mwhitesi to ortholog on Mon Jul 07 2008 at 16:54 UTC | info | related
 
Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.
Galina V Glazko and Arcady R Mushegian
Genome biology 5 (5), R32 (2004)
info:pmid/15128446 | info:doi/10.1186/gb-2004-5-5-r32
Posted by mwhitesi and 1 other to phylogenetics ortholog on Mon Jun 02 2008 at 21:08 UTC | info | related
 
Null mutations in human and mouse orthologs frequently result in different phenotypes
Ben-Yang Liao and Jianzhi Zhang
Proceedings of the National Academy of Sciences 105 (19), 0800387105-6992 (05 May 2008)
info:doi/10.1073/pnas.0800387105
Posted by mwhitesi and 4 others to ortholog on Mon Jun 02 2008 at 17:30 UTC | info | related
 
Comparative Bacterial Proteomics: Analysis of the Core Genome Concept
Comparative bacterial proteomics analysis of the core genome concept
Stephen J Callister et al.
PLoS ONE 3 (2), e1542 (2008)
info:pmid/18253490 | info:doi/10.1371/journal.pone.0001542
Posted by mwhitesi and 1 other to TBR bacteria ortholog on Wed May 07 2008 at 22:12 UTC | info | related
 
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria.
Emmanuelle Lerat, Vincent Daubin, and Nancy A. Moran
PLoS Biology 1 (1), e19 (01 Oct 2003)
info:pmid/12975657 | info:doi/10.1371/journal.pbio.0000019
Curated orthologs and phylogenies for gamma proteobacteria
Posted by mwhitesi and 2 others with 1 comment to ortholog on Tue Apr 29 2008 at 22:46 UTC | info | related
 
Role of Duplicate Genes in Robustness against Deleterious Human Mutations
PLoS Genetics 4 (3), e1000014 (2008)
info:doi/10.1371/journal.pgen.1000014
Paralogs can act as functional duplicates for genes that undergo harmful mutations - robustness
Posted by mwhitesi and 1 other to paralog ortholog on Fri Mar 28 2008 at 23:28 UTC | info | related
 
Assessing performance of orthology detection strategies applied to eukaryotic genomes.
Feng Chen et al.
PLoS ONE 2 (4), e383 (2007)
info:pmid/17440619 | info:doi/10.1371/journal.pone.0000383
Assess ortholog prediction by comparing agreement between different methods - called Latent Class Analysis
Posted by mwhitesi and 5 others to ortholog on Wed Feb 06 2008 at 17:55 UTC | info | related
 
TreeFam: 2008 Update
Jue Ruan et al.
Nucleic acids research 36 (Database issue), D735-40 (Jan 2008)
info:pmid/18056084 | info:doi/10.1093/nar/gkm1005
Database of curated phylogenetic trees with ortholog and paralog assignments
Posted by mwhitesi to paralog ortholog on Tue Jan 15 2008 at 17:34 UTC | info | related
 
OPTIC: orthologous and paralogous transcripts in clades
Andreas Heger and Chris Ponting
Nucleic Acids Research 36 (Database issue), D267 (11 Jan 2008)
info:pmid/17933761 | info:doi/10.1093/nar/gkm852
Database of mammalian orthologs for specific clades
Posted by mwhitesi and 1 other to ortholog on Tue Jan 15 2008 at 17:32 UTC | info | related
 
Clustering of main orthologs for multiple genomes.
Zheng Fu and Tao Jiang
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 6, 195-201 (2007)
info:pmid/17951824
Uses genome rearrangement and gene duplication evidence to find most parsimonious set of orthologs
Posted by mwhitesi to ortholog on Mon Nov 05 2007 at 17:43 UTC | info | related

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