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Bookmarks by "mwhitesi".

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Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarray.
Julia M-L Sung, David H Lloyd, and Jodi A Lindsay
Microbiology (Reading, England) 154 (Pt 7), 1949-59 (Jul 2008)
 
Clustering of main orthologs for multiple genomes.
Zheng Fu and Tao Jiang
Journal of bioinformatics and computational biology 6 (3), 573-84 (Jun 2008)
Posted by mwhitesi to ortholog on Mon Jul 07 2008 at 16:54 UTC | info | related
 
Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.
Galina V Glazko and Arcady R Mushegian
Genome biology 5 (5), R32 (2004)
Posted by mwhitesi and 1 other to phylogenetics ortholog on Mon Jun 02 2008 at 21:08 UTC | info | related
 
Null mutations in human and mouse orthologs frequently result in different phenotypes
Ben-Yang Liao and Jianzhi Zhang
Proceedings of the National Academy of Sciences 105 (19), 0800387105-6992 (05 May 2008)
Posted by mwhitesi and 4 others to ortholog on Mon Jun 02 2008 at 17:30 UTC | info | related
 
Use and misuse of the gene ontology annotations
Seung Yon Rhee et al.
Nature Reviews Genetics, published online 13 May 2008
 
Comparative Bacterial Proteomics: Analysis of the Core Genome Concept
Comparative bacterial proteomics analysis of the core genome concept
Stephen J Callister et al.
PLoS ONE 3 (2), e1542 (2008)
Posted by mwhitesi and 1 other to TBR bacteria ortholog on Wed May 07 2008 at 22:12 UTC | info | related
 
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria.
Emmanuelle Lerat, Vincent Daubin, and Nancy A. Moran
PLoS Biology 1 (1), e19 (01 Oct 2003)
Curated orthologs and phylogenies for gamma proteobacteria
Posted by mwhitesi and 2 others with 1 comment to ortholog on Tue Apr 29 2008 at 22:46 UTC | info | related
 
Translational Systems Biology of Inflammation
PLoS Computational Biology 4 (4), e1000014 (2008)
Posted by mwhitesi to innate_immunity on Fri Apr 25 2008 at 23:49 UTC | info | related
 
Binding-Induced Folding of a Natively Unstructured Transcription Factor
Bindinginduced folding of a natively unstructured transcription factor
Adrian Gustavo Turjanski et al.
PLoS computational biology 4 (4), e1000060 (Apr 2008)
TFs fold upon binding
Posted by mwhitesi and 1 other to transcription_factor on Fri Apr 25 2008 at 23:48 UTC | info | related
 
Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm
PLoS Computational Biology 4 (4), e1000052 (2008)
use foldX tool to predict binding partners for SH2 protein. Can also predict changes in binding energy when mutations occur

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