Connotea: kmutharasan's bookmarks matching tag Bioinformatics

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kmutharasan's bookmarks matching tag Bioinformatics

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Algorithms for Mapping of mRNA Targets for MicroRNA.

Ilya Ioshikhes, Sashwati Roy, and Chandan Sen

DNA and cell biology 26 (4), 265-72 (Apr 2007)

info:pmid/17465893 | info:doi/10.1089/dna.2006.0566

Posted by kmutharasan and 1 other to Bioinformatics algorithm target_prediction microrna on Fri May 11 2007 at 01:27 UTC | info | related

Characterization and Identification of MicroRNA Core Promoters in Four Model Species

Xuefeng Zhou et al.

PLoS Computational Biology 3 (3), 37 (01 Mar 2007)

info:doi/10.1371/journal.pcbi.0030037

Posted by kmutharasan and 3 others to Bioinformatics Promoter microrna on Sat May 05 2007 at 15:12 UTC | info | related

Potent effect of target structure on microRNA function

Dang Long et al.

Nat Struct Mol Biol 14 (4), 287-94 (Apr 2007)

info:doi/10.1038/nsmb1226

Describe a prediction method to determine microRNA target binding based on the secondary structure of the mRNA using SFold.

Posted by kmutharasan and 4 others to Bioinformatics structure sfold target_prediction microrna on Sat May 05 2007 at 15:05 UTC | info | related

Regulatory Circuit of Human MicroRNA Biogenesis

Regulatory circuit of human microRNA biogenesis

Ji Lee et al.

PLoS Computational Biology 3 (4), 67 (01 Apr 2007)

info:doi/10.1371/journal.pcbi.0030067

Posted by kmutharasan and 4 others to microrna Biogenesis Bioinformatics on Sat May 05 2007 at 14:54 UTC | info | related

CrossLink: visualization and exploration of sequence relationships between (micro) RNAs.

Tobias Dezulian et al.

Nucleic acids research. 34 (Web Server issue), 400-4 (01 Jul 2006)

info:pmid/16845036 | info:doi/10.1093/nar/gkl223

Paper that describes a webresource to visualize microRNA relationships

Posted by kmutharasan and 4 others to visualization database Bioinformatics microrna crosslink on Sat May 05 2007 at 14:15 UTC | info | related

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

Lee Lim et al.

Nature 433 (7027), 769-73 (17 Feb 2005)

info:doi/10.1038/nature03315

Posted by kmutharasan and 8 others to Bioinformatics Microarray microrna on Sat Feb 10 2007 at 17:48 UTC | info | related

A guide through present computational approaches for the identification of mammalian microRNA targets

Praveen Sethupathy, Molly Megraw, and Artemis Hatzigeorgiou

Nat Meth 3 (11), 881-6 (Nov 2006)

info:doi/10.1038/nmeth954

Posted by kmutharasan and 3 others to computational Bioinformatics prediction microrna on Sat Feb 10 2007 at 17:41 UTC | info | related

Cell-type-specific signatures of microRNAs on target mRNA expression.

Pranidhi Sood et al.

Proceedings of the National Academy of Sciences of the United States of America 103 (8), 2746-51 (21 Feb 2006)

info:pmid/16477010 |