Connotea: eldfors's bookmarks matching tag Bioinformatics

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eldfors's bookmarks matching tag Bioinformatics

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

Heng Li, Jue Ruan, and Richard Durbin

Genome Research, (19 Aug 2008)

info:pmid/18714091 | info:doi/10.1101/gr.078212.108

http://maq.sourceforge.net/

Posted by eldfors and 2 others to nextgen sequencing Bioinformatics algorithm Alignment read mapping on Sun Aug 24 2008 at 08:32 UTC | info | related

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

Raja Jothi et al.

Nucleic Acids Research, (06 Aug 2008)

info:pmid/18684996 | info:doi/10.1093/nar/gkn488

Algorithm and datasets: http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/sissrs/

Posted by eldfors and 3 others to nextgen sequencing Chromatin Immunoprecipitation ChIP-seq ctcf NRSF STAT1 ChIP-locus TFBS algorithm Bioinformatics on Sat Aug 09 2008 at 06:38 UTC | info | related

FindPeaks 3.1: A Tool for Identifying Areas of Enrichment from Massively Parallel Short-Read Sequencing Technology

FindPeaks 31 a tool for identifying areas of enrichment from massively parallel shortread sequencing technology

Bioinformatics (Oxford, England) 24 (15), 1729-30 (01 Aug 2008)

info:pmid/18599518 | info:doi/10.1093/bioinformatics/btn305

Posted by eldfors and 6 others to Bioinformatics nextgen sequencing ChIP-seq on Mon Jul 14 2008 at 17:01 UTC | info | related

TileQC: a system for tile-based quality control of Solexa data

Peter C Dolan and Dee R Denver

BMC Bioinformatics 9 (1), 250 (28 May 2008)

info:doi/10.1186/1471-2105-9-250

Posted by eldfors and 3 others to Bioinformatics sequencing illumina Solexa on Wed Jun 04 2008 at 11:18 UTC | info | related

Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs

Daniel Zerbino and Ewan Birney

Genome Research, gr.074492.107 (18 Mar 2008)

info:doi/10.1101/gr.074492.107

Posted by eldfors and 6 others with 1 comment to assembly 454 Solexa Bioinformatics on Tue Mar 18 2008 at 23:54 UTC | info | related

Bioinformatics challenges of new sequencing technology

www.sciencedirect.com

Posted by eldfors to review Bioinformatics sequencing nextgen on Wed Feb 13 2008 at 12:13 UTC | info | related

cisRED: a database system for genome-scale computational discovery of regulatory elements -- Robertson et al. 34 (Supplement 1): D68 -- Nucleic Acids Research

nar.oxfordjournals.org

Posted by eldfors to database Promoter Bioinformatics on Tue Jul 10 2007 at 12:23 UTC | info | related

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