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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Adam Siepel et al.
Genome Research 15 (8), 1034-3715005 (15 Jul 2005)
 
Trade-offs in detecting evolutionarily constrained sequence by comparative genomics.
TRADEOFFS IN DETECTING EVOLUTIONARILY CONSTRAINED SEQUENCE BY COMPARATIVE GENOMICS
Annual Review of Genomics and Human Genetics 6 (1), 143 (2005)
 
ddbRNA: detection of conserved secondary structures in multiple alignments.
Diego di Bernardo, Thomas Down, and Tim Hubbard
Bioinformatics (Oxford, England) 19 (13), 1606-11 (01 Sep 2003)
 
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure.
Elfar Torarinsson et al.
Genome Research 16 (7), 885-9 (01 Jul 2006)
 
RNAs everywhere: genome-wide annotation of structured RNAs.
Rolf Backofen et al.
J Exp Zoolog B Mol Dev Evol 308B (1), 1-25 (14 Dec 2006)
 
RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences.
Nucleic Acids Research 32 (10), 3258-69 (15 Jun 2004)

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