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Transcriptional regulation of protein complexes within and across species

Kai Tan et al.

Proceedings of the National Academy of Sciences 104 (4), 1283-8 (23 Jan 2007)

info:doi/10.1073/pnas.0606914104

Posted by braphael and 4 others to transcription networks on Sun Mar 25 2007 at 13:54 UTC | info | related

Estimating Coarse Gene Network Structure from Large-Scale Gene Perturbation Data

Andreas Wagner

Genome Research 12 (2), 309-15 (01 Feb 2002)

info:doi/10.1101/gr.193902

Posted by braphael and 1 other to networks gene on Mon Nov 27 2006 at 18:52 UTC | info | related

Reconstruction of genetic circuits

David Sprinzak and Michael Elowitz

Nature 438 (7067), 443-8 (24 Nov 2005)

info:doi/10.1038/nature04335

Posted by braphael and 3 others to biology Synthetic networks on Tue Nov 21 2006 at 13:48 UTC | info | related

Global topological features of cancer proteins in the human interactome -- Jonsson and Bates 22 (18): 2291 -- Bioinformatics

bioinformatics.oxfordjournals.org

Posted by braphael and 1 other to networks cancer on Sat Nov 18 2006 at 00:21 UTC | info | related

Systematic identification of functional orthologs based on protein network comparison

Sourav Bandyopadhyay, Roded Sharan, and And Ideker

Genome Research 16 (3), 428-35 (01 Mar 2006)

info:doi/10.1101/gr.4526006

Posted by braphael and 2 others to orthologs networks on Sat Nov 18 2006 at 00:20 UTC | info | related

Graemlin: General and robust alignment of multiple large interaction networks

Graemlin general and robust alignment of multiple large interaction networks

Jason Flannick et al.

Genome Research 16 (9), 1169-81 (01 Sep 2006)

info:doi/10.1101/gr.5235706

Posted by braphael and 4 others to Alignment networks on Sat Nov 18 2006 at 00:20 UTC | info | related

Lasting impressions: Motifs in protein-protein maps may provide footprints of evolutionary events

J Rice, Aaron Kershenbaum, and And Stolovitzky

Proceedings of the National Academy of Sciences 102 (9), 3173-4 (01 Mar 2005)

info:doi/10.1073/pnas.0500130102

Posted by braphael to networks on Sat Nov 18 2006 at 00:19 UTC | info | related

An integrative approach for causal gene identification and gene regulatory pathway inference -- Tu et al. 22 (14): e489 -- Bioinformatics

bioinformatics.oxfordjournals.org

Posted by braphael and 1 other to networks causal on Sat Nov 18 2006 at 00:18 UTC | info | related

Revealing Posttranscriptional Regulatory Elements Through Network-Level Conservation

Revealing posttranscriptional regulatory elements through networklevel conservation

Chang Chan, Olivier Elemento, and And Tavazoie

PLoS Computational Biology 1 (7), 69 (01 Dec 2005)

info:doi/10.1371/journal.pcbi.0010069

Posted by braphael and 2 others to networks RNA on Sat Nov 18 2006 at 00:18 UTC | info | related

Assessing the Impact of Alternative Splicing on Domain Interactions in the Human Proteome

pubs.acs.org

Posted by braphael to networks splicing Alt on Thu Nov 16 2006 at 16:34 UTC | info | related

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