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Simplicity, function, and legibility in an enhanced ambigraphic nucleic acid notation
David Rozak and Anthony Rozak
Biotechniques 44 (6), 811-3 (May 2008)
We previously showed that an ambigraphic nucleic acid notation, based on symmetrical lowercase Roman characters, permits users to complement DNA by physically rotating the sequence text 180°. This article describes an enhanced ambigraphic notation, which uses concept-related symbol design, rather than the arbitrary set of symbols that constitute the Roman alphabet, to logically encode the four DNA bases and 11 ambiguity characters. As ambigrams, the symbols continue to permit the rapid derivation of complementary sequences and visualization of palindromic DNA. In addition, the new AmbiScript notation uses legibility principles to support the identification of sequence polymorphism and improves writing efficiency by requiring fewer strokes per character than the International Union of Pure and Applied Chemistry (IUPAC) notation.
Posted by bjhaugen to visualization sequence DNA on Tue Sep 30 2008 at 18:04 UTC | info | related
 
Targeting QseC Signaling and Virulence for Antibiotic Development
David A. Rasko et al.
Science 321 (5892), 1078-80 (22 Aug 2008)
 
Micromanaging ideas risks impeding flow of potential benefits
Nature 454 (7207), 939 (2008)
 
Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
Nature Reviews Genetics 9 (9), 678 (2008)
 
A wiki for the life sciences where authorship matters
Nature Genetics 40 (9), 1047 (2008)
Posted by bjhaugen and 1 other to genetics openscience wiki on Thu Aug 28 2008 at 16:46 UTC | info | related
 
Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli.
Kai Zhao, Mingzhu Liu, and Richard Burgess
Nucleic Acids Res, (18 Jun 2007)
A description of the FlhDC and sigma-F regulons.
 
Commensal and pathogenic Escherichia coli use a common pilus adherence factor for epithelial cell colonization
Maria Rendon et al.
Proceedings of the National Academy of Sciences 104 (25), 10637-42 (19 Jun 2007)
Posted by bjhaugen to Pili EHEC Escherichia coli on Tue Jun 19 2007 at 18:20 UTC | info | related
 
Characterization of four novel genomic regions of uropathogenic Escherichia coli highly associated with the extraintestinal virulent phenotype: A jigsaw puzzle of genetic modules.
Liisa Sorsa et al.
Int J Med Microbiol, (03 Feb 2007)
Posted by bjhaugen to upec Expec Iwantthis on Wed Feb 07 2007 at 20:48 UTC | info | related
 
Cooperation and conflict in microbial biofilms
From the Cover Cooperation and conflict in microbial biofilms
Joao Xavier and Kevin Foster
Proceedings of the National Academy of Sciences 104 (3), 876-81 (16 Jan 2007)
Posted by bjhaugen and 2 others to IBC pods Biofilm on Wed Jan 17 2007 at 15:37 UTC | info | related
 
Polymorphic Secreted Kinases Are Key Virulence Factors in Toxoplasmosis
J P J Saeij et al.
Science 314 (5806), 1780-3 (15 Dec 2006)
Posted by bjhaugen and 2 others with 1 comment to susancoller Toxo on Mon Jan 01 2007 at 17:12 UTC | info | related

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