Connotea: arve's bookmarks matching tag testing

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accuracy

gene family evolution

genome-rearrangement- s

ligand binding domain

phylgenetic footprinting

positive-feedback-lo- op

positive-selection

posterior probability

propensity for gene loss

secondary-structure-- prediction

statistical alignment

structure

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transcription factors

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whole-genome duplication

Wolfe

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arve's bookmarks matching tag testing

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Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

Stefanie Hartmann and Todd Vision

BMC evolutionary biology 8 (1), 95 (26 Mar 2008)

info:pmid/18366758 | info:doi/10.1186/1471-2148-8-95

Posted by arve and 3 others with 1 comment to evaluation testing errors phylogeny est on Fri Apr 11 2008 at 16:07 UTC | info | related

Alignment Uncertainty and Genomic Analysis

Alignment uncertainty and genomic analysis

Karen Wong, Marc Suchard, and John Huelsenbeck

Science 319 (5862), 473-6 (25 Jan 2008)

info:doi/10.1126/science.1151532

Posted by arve and 6 others to uncertainty testing Alignment multialignment on Wed Jan 30 2008 at 12:16 UTC | info | related

Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics

Systematic Biology 52 (5), 665 (2003)

info:doi/10.1080/10635150390235485

Posted by arve to testing debate posterior probability bayesian MCMC on Wed Jan 30 2008 at 12:02 UTC | info | related

Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability

Molecular Biology and Evolution 20 (2), 248 (2003)

info:doi/10.1093/molbev/msg042

Posted by arve and 1 other to testing posterior probability debate bayesian MCMC on Wed Jan 30 2008 at 11:52 UTC | info | related

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.

BMC Evolutionary Biology 5 (1), 8 (2005)

info:doi/10.1186/1471-2148-5-8

Posted by arve to bayesian testing debate MCMC posterior probability on Tue Jan 29 2008 at 12:03 UTC | info | related

Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models

Systematic Biology 53 (6), 904 (2004)

info:doi/10.1080/10635150490522629

Posted by arve to testing debate posterior probability bayesian MCMC on Tue Jan 29 2008 at 11:36 UTC | info | related

Exploring the Relationship between Sequence Similarity and Accurate Phylogenetic Trees -- Cantarel et al. 23 (11): 2090 -- Molecular Biology and Evolution

mbe.oxfordjournals.org

Posted by arve to testing phylogeny synthetic data multialignment on Mon Oct 02 2006 at 09:57 UTC | info | related