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Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
Stefanie Hartmann and Todd Vision
BMC evolutionary biology 8 (1), 95 (26 Mar 2008)
 
Predicting protein function by machine learning on amino acid sequences - A critical evaluation
Ali Al-Shahib, Rainer Breitling, and David Gilbert
BMC Genomics 8 (1), 78 (20 Mar 2007)
 
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
Thomas M Keane et al.
BMC Evolutionary Biology 6 (1), 29 (24 Mar 2006)
 
BioMed Central | Abstract | 1471-2105-6-278 | Multiple sequence alignment accuracy and evolutionary distance estimation
Multiple sequence alignment accuracy and evolutionary distance estimation
BMC Bioinformatics 6 (1), 278 (2005)

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