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An Improved General Amino-Acid Replacement Matrix
Molecular Biology and Evolution, (2008)
info:doi/10.1093/molbev/msn067
Posted by arve and 1 other to RATES estimate evolution matrix model substitution-rates on Sun Jun 15 2008 at 06:59 UTC | info | related
 
A Bayesian evolutionary distance for parametrically aligned sequences
Pankaj Agarwal and David States
Journal of Computational Biology 3 (1), 1-17 (1996)
info:pmid/8697232
Posted by arve to good-read estimate divergence distances bayesian distance expected on Thu Mar 20 2008 at 11:18 UTC | info | related
 
Branch and bound computation of exact p-values
Bioinformatics 22 (17), 2158 (2006)
info:doi/10.1093/bioinformatics/btl357
Posted by arve to estimate branch and bound p-value on Mon Aug 21 2006 at 05:54 UTC | info | related
 
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
Thomas M Keane et al.
BMC Evolutionary Biology 6 (1), 29 (24 Mar 2006)
info:doi/10.1186/1471-2148-6-29
Posted by arve with 1 comment to model evolution Amino Acid estimate RATES evaluation AIC on Fri May 19 2006 at 10:46 UTC | info | related
 
Estimation of Amino Acid Residue Substitution Rates at Local Spatial Regions and Application in Protein Function Inference: A Bayesian Monte Carlo Approach
Molecular Biology and Evolution 23 (2), 421 (2005)
info:doi/10.1093/molbev/msj048
Posted by arve to Amino Acid estimate RATES on Mon Jan 09 2006 at 13:51 UTC | info | related

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