Connotea: akborder's bookmarks matching tag Blast

akborder's groups:

belangeri (created by nookland)

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alternative splicing

artificial intelligence

compact approximator

comparative genomics

computational geometry

distributed system

DYNAMIC PROGRAMMING

error correction

evolutionary distance

functional programming

garbage collection

gene duplication

gene prediction

genetic algorithm

genome rearrangement

genome sequence

genome variation

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lambda calculus

linear programming

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multiple alignment

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prj_intron_- net

retrotransposition

secondary structure

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system resources

virtual reality

Waterman-Eggert

Users who used Blast:

eckart_bindewald

micheldumontier

rajeshgollapudi

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akborder's bookmarks matching tag Blast

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www.fsa-blast.org

Posted by akborder and 1 other to DYNAMIC PROGRAMMING tool algorithm Blast FSA on Mon Apr 21 2008 at 12:13 UTC | info | related

PowerBLAST: a new network BLAST application for interactive or automated sequence analysis and annotation.

J Zhang and T L Madden

Genome research. 7 (6), 649-56 (Jun 1997)

info:pmid/9199938

Posted by akborder to Blast toread Alignment on Wed Jul 19 2006 at 08:26 UTC | info | related

Basic local alignment search tool.

S F Altschul et al.

Journal of molecular biology. 215 (3), 403-10 (05 Oct 1990)

info:pmid/2231712 | info:doi/10.1006/jmbi.1990.9999

Posted by akborder and 6 others to toread Blast Alignment on Wed Jul 19 2006 at 08:03 UTC | info | related

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

Paul Flicek et al.

Genome research. 13 (1), 46-54 (Jan 2003)

info:pmid/12529305 | info:doi/10.1101/gr.830003

Posted by akborder and 1 other to wublast Blast toread Alignment on Sun Jul 16 2006 at 14:48 UTC | info | related

Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms.

W R Pearson

Genomics. 11 (3), 635-50 (Nov 1991)

info:pmid/1774068

Posted by akborder to Offline toread Blast Smith-Waterman Alignment on Fri Jun 30 2006 at 08:19 UTC | info | related

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

S F Altschul et al.

Nucleic acids research. 25 (17), 3389-3402 (01 Sep 1997)

info:pmid/9254694

Posted by akborder and 2 others to Blast Alignment on Mon May 29 2006 at 13:07 UTC | info | related

www.ncbi.nlm.nih.gov

Spidey was written with two main goals in mind: find good alignments regardless of intron size; and avoid getting confused by nearby pseudogenes and paralogs.

Posted by akborder to Blast Alignment on Mon May 22 2006 at 10:59 UTC | info | related

BLAST scoring parameters

ftp.ncbi.nlm.nih.gov

Posted by akborder to Alignment Blast on Sun May 21 2006 at 11:20 UTC | info | related

MPBLAST : improved BLAST performance with multiplexed queries.

I Korf and W Gish

Bioinformatics (Oxford, England) 16 (11), 1052-3 (Nov 2000)

info:pmid/11159321

Posted by akborder to Blast Alignment on Sun May 21 2006 at 11:10 UTC | info | related

miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST

Nucleic Acids Research 33 (13), 4335 (2005)

info:doi/10.1093/nar/gki739

Posted by akborder and 1 other to Blast Alignment on Sun May 21 2006 at 10:36 UTC | info | related

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