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From Pathways Databases to Network Models of Switching Behavior
Baltazar D. Aguda and Andrew B. Goryachev
PLoS Computational Biology 3 (9), e152 (01 Sep 2007)
info:doi/10.1371/journal.pcbi.0030152
Posted by agonzale and 2 others to network database modelling review on Fri Jun 13 2008 at 09:43 UTC | info | related
 
Topological Analysis of MAPK Cascade for Kinetic ErbB Signaling
Topological analysis of MAPK cascade for kinetic ErbB signaling
Takashi Nakakuki et al.
PLoS ONE 3 (3), e1782 (2008)
info:pmid/18335053 | info:doi/10.1371/journal.pone.0001782
Posted by agonzale to MAPK modelling pathway on Thu Mar 13 2008 at 02:14 UTC | info | related
 
Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism
François Giudicelli et al.
PLoS Biology 5 (6), e150 (01 Jun 2007)
info:doi/10.1371/journal.pbio.0050150
Posted by agonzale to somitogenesis_zebrafish modelling on Wed Jan 02 2008 at 04:50 UTC | info | related
 
A dynamic P53-MDM2 model with time delay
Chaos Solitons & Fractals 30 (4), 936 (2006)
info:doi/10.1016/j.chaos.2005.08.206
Posted by agonzale to modelling oscillations on Wed Jan 02 2008 at 04:32 UTC | info | related
 
Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae
Molecular Systems Biology 3, (2007)
info:doi/10.1038/msb4100194
Posted by agonzale to acetylation modelling on Fri Dec 21 2007 at 09:01 UTC | info | related
 
Deriving structure from evolution: metazoan segmentation
Paul Francois, Vincent Hakim, and Eric Siggia
Mol Syst Biol 3, (18 Dec 2007)
info:doi/10.1038/msb4100192
Posted by agonzale and 2 others to modelling somitogenesis_mouse on Fri Dec 21 2007 at 08:54 UTC | info | related
 
A model of protein translation including codon bias, nonsense errors, and ribosome recycling
Journal of Theoretical Biology 239 (4), 417 (2006)
info:doi/10.1016/j.jtbi.2005.08.007
Posted by agonzale to translation modelling on Tue Nov 27 2007 at 10:57 UTC | info | related
 
7 Coordinated Action of N-CAM, N-cadherin, EphA4, and ephrinB2 Translates Genetic Prepatterns into Structure during Somitogenesis in Chick.
James A Glazier et al.
Current topics in developmental biology 81, 205-47 (2007)
info:pmid/18023729 | info:doi/10.1016/S0070-2153(07)81007-6
Posted by agonzale to modelling somitogenesis_mouse on Mon Nov 26 2007 at 02:43 UTC | info | related
 
6 mathematical models for somite formation.
Ruth E Baker, Santiago Schnell, and Philip K Maini
Current topics in developmental biology 81, 183-203 (2007)
info:pmid/18023728 | info:doi/10.1016/S0070-2153(07)81006-4
Posted by agonzale to reviews modelling somitogenesis_mouse on Mon Nov 26 2007 at 02:42 UTC | info | related
 
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
Journal of Computational Biology 13 (9), 1630 (2006)
info:doi/10.1089/cmb.2006.13.1630
Posted by agonzale to gene network stochastic modelling on Mon Nov 19 2007 at 12:20 UTC | info | related

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