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A scalable method for integration and functional analysis of multiple microarray datasets.

Curtis Huttenhower et al.

Bioinformatics (Oxford, England) 22 (23), 2890-7 (01 Dec 2006)

info:pmid/17005538 | info:doi/10.1093/bioinformatics/btl492

Posted by dswan to functional annotation integration yeast Microarray on Fri Jul 04 2008 at 10:41 UTC | info | related

Exploring the functional landscape of gene expression: directed search of large microarray compendia.

Matthew Hibbs et al.

Bioinformatics (Oxford, England) 23 (20), 2692-9 (15 Oct 2007)

info:pmid/17724061 | info:doi/10.1093/bioinformatics/btm403

Posted by dswan and 1 other to yeast clustering integration expression functional functional annotation on Fri Jul 04 2008 at 10:40 UTC | info | related

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

Jun Zhu et al.

Nat Genet 40 (7), 854-61 (Jul 2008)

info:doi/10.1038/ng.167

Posted by spitshine and 7 others to transcription factors protein-protein interactions yeast regulation on Mon Jun 30 2008 at 10:19 UTC | info | related

Systematic Identification of the Genes Affecting Glycogen Storage in the Yeast Saccharomyces cerevisiae: Implication of the Vacuole as a Determinant of Glycogen Level

Wayne Wilson, Zhong Wang, and Peter Roach

Molecular Cellular Proteomics 1 (3), 232-42 (01 Mar 2002)

info:doi/10.1074/mcp.M100024-MCP200

Posted by dbridges to glycogen synthesis Glycogen Synthase glycogen vacuole yeast on Sun Jun 29 2008 at 14:42 UTC | info | related

Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences

S Pitre et al.

Nucleic Acids Research, (27 Jun 2008)

info:doi/10.1093/nar/gkn390

Posted by spitshine to protein-protein interactions yeast on Sat Jun 28 2008 at 11:23 UTC | info | related

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

Jun Zhu et al.

Nature genetics, published online 15 Jun 2008

info:pmid/18552845 | info:doi/10.1038/ng.167

Posted by tdanford and 7 others to functional annotation yeast networks on Fri Jun 27 2008 at 19:27 UTC | info | related

An inventory of yeast proteins associated with nucleolar and ribosomal components.

Eike Staub, Sebastian Mackowiak, and Martin Vingron

Genome Biology 7 (10), R98 (26 Oct 2006)

info:pmid/17067374 | info:doi/10.1186/gb-2006-7-10-r98

Posted by spitshine and 1 other to nucleolus yeast phylogeny on Fri Jun 27 2008 at 09:37 UTC | info | related

A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae)

Olga Troyanskaya et al.

Proceedings of the National Academy of Sciences 100 (14), 8348-53 (08 Jul 2003)

Posted by hpshanahan and 1 other to integration yeast bayesian on Thu Jun 26 2008 at 16:02 UTC | info | related

Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

Jun Zhu et al.

Nature Genetics, (2008)

info:doi/10.1038/ng.167

Posted by rdowell and 7 others to RM11-1 yeast bayesian network on Mon Jun 23 2008 at 14:13 UTC | info | related

SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation

Morten Kloster and Chao Tang

Nucleic Acids Research 36 (11), (01 Jun 2008)

info:pmid/18495752 | info:doi/10.1093/nar/gkn288

Nothing breathtakingly novel but a solid reference for estimating codon bias.

Posted by spitshine and 1 other to codon usage yeast on Mon Jun 23 2008 at 09:01 UTC | info | related

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