Connotea: Bookmarks matching tag modeling

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Introducing spatial information into predictive NF-kappaB modelling--an agent-based approach.

Mark Pogson et al.

PLoS ONE 3 (6), e2367 (2008)

info:pmid/18523553 | info:doi/10.1371/journal.pone.0002367

Posted by hbeale to modeling on Sat Oct 11 2008 at 17:03 UTC | info | related

An efficient stochastic diffusion algorithm for modeling second messengers in dendrites and spines.

Kim T Blackwell

Journal of neuroscience methods. 157 (1), 142-53 (15 Oct 2006)

info:pmid/16687175 | info:doi/10.1016/j.jneumeth.2006.04.003

Posted by hbeale and 1 other to modeling on Sat Oct 11 2008 at 16:53 UTC | info | related

A model of activity-dependent changes in dendritic spine density and spine structure.

Underlying processes in the poor response inhibition of children with AttentionDeficitHyperactivity Disorder

Johana Prihatini et al.

Journal of attention disorders 37 (3), 126-31 (Apr 2003)

info:pmid/16110174 | info:doi/10.1267/science.040579197

Posted by hbeale and 4 others to modeling on Sat Oct 11 2008 at 16:50 UTC | info | related

Modeling the sub-cellular signaling pathways involved in reinforcement learning at the striatum.

Shesharao M Wanjerkhede and Raju S Bapi

Progress in brain research 168, 193-206 (2008)

info:pmid/18166396 | info:doi/10.1016/S0079-6123(07)68016-9

Posted by hbeale to plasticity modeling on Sat Oct 11 2008 at 16:49 UTC | info | related

Reversible - through calmodulin - electrostatic interactions between basic residues on proteins and acidic lipids in the plasma membrane.

Stuart McLaughlin et al.

Biochemical Society symposium (72), 189-98 (2005)

info:pmid/15649142

Posted by hbeale to Calmodulin modeling on Sat Oct 11 2008 at 16:48 UTC | info | related

Kinetic characterization of novel NR2B antagonists using fluorescence detection of calcium flux.

Bohumil Bednar et al.

Journal of neuroscience methods 137 (2), 247-55 (30 Aug 2004)

info:pmid/15262068 | info:doi/10.1016/j.jneumeth.2004.02.034

Posted by hbeale to modeling on Sat Oct 11 2008 at 16:46 UTC | info | related

Making sense of AMPA receptor trafficking by modeling molecular mechanisms of synaptic plasticity.

Dirk Langemann, Luc Pellerin, and Achim Peters

Brain research 1207, 60-72 (01 May 2008)

info:pmid/18377876 | info:doi/10.1016/j.brainres.2008.01.097

Posted by hbeale to modeling on Sat Oct 11 2008 at 16:30 UTC | info | related

A sodium-mediated structural switch that controls the sensitivity of Kir channels to PtdIns(4,5)P2

Avia Rosenhouse-Dantsker et al.

Nature Chemical Biology 4, 624-31 (2008)

info:pmid/18794864 | info:doi/10.1038/nchembio.112

Posted by PSIKB to 2008-10 structure-function modeling on Wed Oct 08 2008 at 10:55 UTC | info | related

TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model

Mallika Veeramalai, Yuzhen Ye, and Adam Godzik

BMC Bioinformatics 9, 358 (2008)

info:pmid/18759993 | info:doi/10.1186/1471-2105-9-358

Posted by PSIKB to 2008-10 ByPSI modeling on Tue Oct 07 2008 at 20:14 UTC | info | related

De novo computational design of retro-aldol enzymes

Lin Jiang et al.

Science 319, 1387-91 (2008)

info:pmid/18323453 | info:doi/10.1126/science.1152692

Posted by PSIKB and 4 others to 2008-10 ByPSI modeling on Tue Oct 07 2008 at 20:14 UTC | info | related

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