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Kirschner Lab
malthus.micro.med.umich.edu
 
Rainfall-Runoff Modelling – Comparison of Modelling Strategies with a Focus on Ungauged Predictions and Model Integration
Teemu Kokkonen
Rainfall-Runoff Modelling – Comparison of Modelling Strategies with a Focus on Ungauged Predictions and Model Integration
 
CellML: its future, present and past
Catherine Lloyd, Matt Halstead, and Poul Nielsen
Progress in Biophysics and Molecular Biology 85 (2-3), 433-50 (2004)
Advances in biotechnology and experimental techniques have lead to the elucidation of vast amounts of biological data. Mathematical models provide a method of analysing this data; however, there are two issues that need to be addressed: (1) the need for standards for defining cell models so they can, for example, be exchanged across the World Wide Web, and also read into simulation software in a consistent format and (2) eliminating the errors which arise with the current method of model publication. CellML has evolved to meet these needs of the modelling community. CellML is a free, open-source, eXtensible markup language based standard for defining mathematical models of cellular function. In this paper we summarise the structure of CellML, its current applications (including biological pathway and electrophysiological models), and its future development--in particular, the development of toolsets and the integration of ontologies.
 
Mathematical modelling of metabolic pathways affected by an enzyme deficiency. A mathematical model of glycolysis in normal and pyruvate- kinase-deficient red blood cells
HG Holzhutter, G Jacobasch, and A Bisdorff
FEBS Journal 149 (1), 101-11 (15 May 1985)
 
Cellml.org - Full-scale model of glycolysis in Saccharomyces cerevisiae
www.cellml.org
 
Understanding biological complexity: lessons from the past
JAMES N. WEISS, ZHILIN QU, and ALAN GARFINKEL
The FASEB Journal 17 (1), 1-6 (01 Jan 2003)
Posted by karthik to mathematical modelling on Mon Jan 30 2006 at 10:54 UTC | info | related
 
Model behaviour
plus.maths.org
Posted by plwilson (who is an author) to mathematical modelling popular science on Mon Aug 29 2005 at 07:50 UTC | info | related

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