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Recent "genomic" articles

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dUTP incorporation into genomic DNA is linked to transcription in yeast
Nayun Kim and Sue Jinks-Robertson
Nature, published online 17 May 2009
 
Asthma genetics and genomics 2009
Current Opinion in Genetics & Development 19 (3), 279 (2009)
Asthma Genetic Association studies have been plagued by methodologic problems that are common in all studies of complex traits: small sample size, lack of replication, and lack of control of population stratification. Despite this, the field has identified 43 replicated genes from association studies. The most frequently replicated are: TNF alpha, IL4, FCERB, Adam 33, and GSTP1. Several genes have been identified by linkage and fine mapping (ADAM33, DPP10, GPR154, and PHF11) and one gene has been identified by GWAS (ORMD3). The major issue is that these genes have been looked at one at a time rather than in some more holistic manner where epistasis is considered. For asthma genetics to begin to have an impact on clinical medicine we need to consider epistatic interaction.
 
Evolutionary developmental biology and genomics
Cristian Canestro, Hayato Yokoi, and John Postlethwait
Nat Rev Genet 8 (12), 932-42 (Dec 2007)
Posted by bartg01 and 3 others to Evo-Devo genomic on Sat May 16 2009 at 11:45 UTC | info | related
 
Shaping segments: Hox gene function in the genomic age
Stefanie D. Hueber and Ingrid Lohmann
BioEssays 30 (10), 965-79 (2008)
Posted by bartg01 to Evo-Devo genomic function hox on Fri May 15 2009 at 09:15 UTC | info | related
 
METAGENOMICS: Genomic Analysis of Microbial Communities
Annual Review of Genetics 38 (1), 525 (2004)
 
A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation
Patrick Tarpey et al.
Nature Genetics, published online 19 Apr 2009
 
Human olfaction: from genomic variation to phenotypic diversity
Trends in Genetics 25 (4), 178 (2009)
The sense of smell is a complex molecular device, encompassing several hundred olfactory receptor proteins (ORs). These receptors, encoded by the largest human gene superfamily, integrate odorant signals into an accurate ‘odor image’ in the brain. Widespread phenotypic diversity in human olfaction is, in part, attributable to prevalent genetic variation in OR genes, owing to copy number variation, deletion alleles and deleterious single nucleotide polymorphisms. The development of new genomic tools, including next generation sequencing and CNV assays, provides opportunities to characterize the genetic variations of this system. The advent of large-scale functional screens of expressed ORs, combined with genetic association studies, has the potential to link variations in ORs to human chemosensory phenotypes. This promises to provide a genome-wide view of human olfaction, resulting in a deeper understanding of personalized odor coding, with the potential to decipher flavor and fragrance preferences.
Posted by lry198010 to phenome genomic QTL on Tue Apr 07 2009 at 14:27 UTC | info | related
 
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes
Nucleic Acids Research, (2009)
 
http://genomique.genotoul.fr/intranet/index.php?id=62
 
Genomics of growth traits in forest trees
Current Opinion in Plant Biology 12 (2), 148 (2009)
Growth traits in trees are fundamental components of adaptation in a forest ecosystem and of productivity in planted forests. A number of processes determine tree growth, which are controlled by genetic and epigenetic factors that respond dynamically to environmental signals throughout centuries. Advances in genomics have allowed an increased comprehension of the complex mechanisms of tree growth and adaptation. Yet, the application of genomics to improving forest productivity and sustainability still entails capturing a large proportion of the total genetic variation controlling the component traits. Nonetheless, genetics and genomics are unifying disciplines that will serve well to dissect the variables and mechanisms of tree growth and development.
Posted by lry198010 to genomic QTL on Sun Mar 22 2009 at 13:20 UTC | info | related

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