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Obituary: Joshua Lederberg (1925-2008)
Baruch Blumberg
Nature 452 (7186), 422 (27 Mar 2008)
Together with colleagues, including Esther Zimmer (to whom he was then married) and Norton Zinder, he discovered that viruses that infect bacteria can transfer genetic information between their hosts. This mechanism — transduction — was an unexpected way of altering the host's genetic make-up, and later assumed special significance with the recognition that viral sequences can be inserted in the human genome and can presumably be inherited. The discovery of transduction opened a vast area for research on the role of viruses in evolution and disease, and — even more intriguing — into the non-pathological characteristics of microorganisms. Another surprise was the finding that small, ring-shaped pieces of DNA, termed plasmids, reside in microbial cells and are distinct from chromosomal DNA, being capable of autonomous replication. Plasmids can be introduced into other cells to produce vast amounts of useful proteins such as human insulin and the hepatitis B virus vaccine. Lederberg's work was seminal in initiating a new approach to biology based on the genome and its interactions with the environment. This was recognized by the award of the Nobel prize in 1958, at the age of 33, which he shared with George Beadle and Edward Tatum.
 
Evidence for Karyogamy and Exchange of Genetic Material in the Binucleate Intestinal Parasite Giardia intestinalis
Marianne Poxleitner et al.
Science 319 (5869), 1530-3 (14 Mar 2008)
The diplomonad parasite Giardia intestinalis contains two functionally equivalent nuclei that are inherited independently during mitosis. Although presumed to be asexual, Giardia has low levels of allelic heterozygosity, indicating that the two nuclear genomes may exchange genetic material. Fluorescence in situ hybridization performed with probes to an episomal plasmid suggests that plasmids are transferred between nuclei in the cyst, and transmission electron micrographs demonstrate fusion between cyst nuclei. Green fluorescent protein fusions of giardial homologs of meiosis-specific genes localized to the nuclei of cysts, but not the vegetative trophozoite. These data suggest that the fusion of nuclei, or karyogamy, and subsequently somatic homologous recombination facilitated by the meiosis gene homologs, occur in the giardial cyst.
 
A high-power laser-driven source of sub-nanosecond soft X-ray pulses for single-shot radiobiology experiments
Marie Davidkova et al.
Radiation research Volume 168 (3), 382-7 (Sep 2007)
A large-scale, double-stream gas puff target has been illuminated by sub-kJ, near-infrared (NIR) focused laser pulses at the PALS facility (Prague Asterix Laser System) to produce high-energy pulses of soft X rays from hot, dense plasma. The double-puff arrangement ensures high gas density and conversion efficiency from NIR to X rays approaching that typical for solid targets. In addition, its major advantage over solid targets is that it is free of debris and has substantially suppressed charged-particle emission. The X-ray emission characteristics of the source were determined for a range of gases that included krypton, xenon, N(2), CO and N(2)-CO. A demonstrated application of the xenon-based source is a single-shot damage induction to plasmid DNA. The yields of single-strand breaks (SSBs) and double-strand breaks (DSBs) were determined as a function of energy fluence adjusted by varying distance of sample from the source and thickness of aluminum filters.
 
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain
E J Cho et al.
Genes & development 15 (24), 3319-29 (15 Dec 2001)
 
RNA polymerase II subunits 2, 3, and 11 form a core subassembly with DNA binding activity
M Kimura, A Ishiguro, and A Ishihama
The Journal of biological chemistry 272 (41), 25851-5 (10 Oct 1997)
 
Multireplicon genome architecture of Lactobacillus salivarius.
From the Cover Multireplicon genome architecture of Lactobacillus salivarius
Marcus J Claesson et al.
Proceedings of the National Academy of Sciences of the United States of America. 103 (17), 6718-23 (25 Apr 2006)
Lactobacillus salivarius subsp. salivarius strain UCC118 is a bacteriocin-producing strain with probiotic characteristics. The 2.13-Mb genome was shown by sequencing to comprise a 1.83 Mb chromosome, a 242-kb megaplasmid (pMP118), and two smaller plasmids. Megaplasmids previously have not been characterized in lactic acid bacteria or intestinal lactobacilli. Annotation of the genome sequence indicated an intermediate level of auxotrophy compared with other sequenced lactobacilli. No single-copy essential genes were located on the megaplasmid. However, contingency amino acid metabolism genes and carbohydrate utilization genes, including two genes for completion of the pentose phosphate pathway, were megaplasmid encoded. The megaplasmid also harbored genes for the Abp118 bacteriocin, a bile salt hydrolase, a presumptive conjugation locus, and other genes potentially relevant for probiotic properties. Two subspecies of L. salivarius are recognized, salivarius and salicinius, and we detected megaplasmids in both subspecies by pulsed-field gel electrophoresis of sizes ranging from 100 kb to 380 kb. The discovery of megaplasmids of widely varying size in L. salivarius suggests a possible mechanism for genome expansion or contraction to adapt to different environments.
 
Facile recovery of individual high-molecular-weight, low-copy-number natural plasmids for genomic sequencing.
Laura Williams et al.
Applied and environmental microbiology 72 (7), 4899-4906 (Jul 2006)
Posted by GVdAuwera to Plasmids HGT on Mon May 07 2007 at 00:28 UTC | info | related
 
A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast
U. Gueldener et al.
Nucleic Acids Research 30 (6), (15 Mar 2002)
Times Cited: 2 Article English Hegemann, J. H Univ Dusseldorf, Inst Mikrobiol, Univ Str 1,Geb 26-12-64, D-40225 Dusseldorf, Germany Cited References Count: 43 532HH GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND OXFORD
 
A novel genetic system to detect protein-protein interactions
S. Fields and O. Song
Nature 340 (6230), 245-6 (1989)
89330544
 
Generation of the Brucella melitensis ORFeome version 1.1
Amélie Dricot et al.
Genome research 14 (10B), 2201-6 (Oct 2004)

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