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Recent "Nucleosomes" articles

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The DNA sequence-dependence of nucleosome positioning in vivo and in vitro (713-724)
www.jbsdonline.com
Posted by oliver to chromosome organization chromosome territories Nucleosomes chromatin on Thu Mar 18 2010 at 07:55 UTC | info | related
 
Nucleosome landscape and control of transcription in the human malaria parasite
Nadia Ponts et al.
Genome Research 20 (2), (01 Feb 2010)
info:pmid/20054063 | info:doi/10.1101/gr.101063.109
changes in transcription patterns brought about by overall alterations in the chromatin conformation
Posted by christoforosnikolaou to transcription Nucleosomes on Tue Feb 02 2010 at 06:41 UTC | info | related
 
Gene Expression Divergence in Yeast is Coupled to Evolution of DNA-Encoded Nucleosome Organization
Gene expression divergence in yeast is coupled to evolution of DNAencoded nucleosome organization
Yair Field et al.
Nature genetics, published online 01 Mar 2009
info:pmid/19252487 | info:doi/10.1038/ng.324
Is almost a copy (too bad!) of an older article by Laurence Hurst http://www.ncbi.nlm.nih.gov/pubmed/17660811?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3
Posted by christoforosnikolaou and 5 others to transcription Nucleosomes on Wed Jan 27 2010 at 13:41 UTC | info | related
 
Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae
Robert Morris, Timothy O'Connor, and John Wyrick
Bioinformatics 26 (2), 168 (15 Jan 2010)
info:pmid/19959498 | info:doi/10.1093/bioinformatics/btp657
Look more into the webserver http://bioinformatics1.smb.wsu.edu/Ceres
Posted by christoforosnikolaou and 1 other to transcription database method Nucleosomes on Tue Jan 12 2010 at 11:07 UTC | info | related
 
G+C content dominates intrinsic nucleosome occupancy
Desiree Tillo and Timothy R Hughes
BMC Bioinformatics 10 (1), 442 (22 Dec 2009)
info:doi/10.1186/1471-2105-10-442
Correlating the GC content with nucleosome positioning appears to be the main sequence underlying feature
Posted by christoforosnikolaou to GC content Nucleosomes on Wed Dec 23 2009 at 12:21 UTC | info | related
 
PLoS ONE: Repertoires of the Nucleosome-Positioning Dinucleotides
www.plosone.org
Posted by christoforosnikolaou with 1 comment to dinucleotides DNA structure Nucleosomes on Sat Oct 31 2009 at 06:39 UTC | info | related
 
The coexistence of the nucleosome positioning code with the genetic code on eukaryotic genomes
Amir Cohanim and Tali Haran
Nucleic Acids Research 37 (19), (01 Oct 2009)
info:pmid/19700771 | info:doi/10.1093/nar/gkp689
Posted by christoforosnikolaou to genetic code Nucleosomes on Sat Oct 31 2009 at 06:17 UTC | info | related
 
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
HIGHRESOLUTION NUCLEOSOME MAPPING REVEALS TRANSCRIPTIONDEPENDENT PROMOTER PACKAGING
Assaf Weiner et al.
Genome Research 20 (1), (21 Oct 2009)
info:pmid/19846608 | info:doi/10.1101/gr.098509.109
a method for deep-seq analyzing, plus evidence for susceptible to eviction nucleosomes
Posted by christoforosnikolaou and 1 other with 1 comment to transcription chipseq promoters method Nucleosomes on Thu Oct 22 2009 at 08:32 UTC | info | related
 
Nucleosomes are preferentially positioned at exons in somatic and sperm cells.
Satu Nahkuri, Ryan Taft, and John Mattick
Cell cycle (Georgetown, Tex.) 8 (20), (25 Oct 2009)
info:pmid/19823040
do I need to say told you so?
Posted by christoforosnikolaou to splicing Exons Nucleosomes on Fri Oct 16 2009 at 13:40 UTC | info | related
 
Nucleosome positioning as a determinant of exon recognition
Hagen Tilgner et al.
Nature Structural & Molecular Biology advance online publication (9), 996-1001 (16 Aug 2009)
info:doi/10.1038/nsmb.1658
Posted by christoforosnikolaou (who is an author) and 2 others to splicing Nucleosomes on Thu Oct 08 2009 at 11:14 UTC | info | related

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