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KEGG
www.genome.jp
'Kyoto encyclopedia of genes and genomes'
Posted by ncb and 53 others to datastandardization Kyoto Encyclopedia of Genes and Genomes KEGG database on Thu Oct 02 2008 at 09:29 UTC | info | related
 
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
Peter D Karp et al.
Nucleic acids research 33 (19), 6083-9 (2005)
info:pmid/16246909 | info:doi/10.1093/nar/gki892
Posted by tny and 1 other to KEGG pathway on Wed Aug 20 2008 at 10:56 UTC | info | related
 
KEGG Atlas mapping for global analysis of metabolic pathways.
Shujiro Okuda et al.
Nucleic acids research 36 (Web Server issue), (13 May 2008)
info:pmid/18477636 | info:doi/10.1093/nar/gkn282
Posted by ibycus to KEGG on Thu May 15 2008 at 15:55 UTC | info | related
 
From genomics to chemical genomics: new developments in KEGG.
Minoru Kanehisa et al.
Nucleic acids research. 34 (Database issue), D354-7 (01 Jan 2006)
info:pmid/16381885 | info:doi/10.1093/nar/gkj102
Posted by rdowell and 6 others to KEGG metabolism on Thu Apr 24 2008 at 19:47 UTC | info | related
 
KEGG for linking genomes to life and the environment.
Minoru Kanehisa et al.
Nucleic Acids Research 36 (Database issue), D480-4 (11 Jan 2008)
info:pmid/18077471 | info:doi/10.1093/nar/gkm882
Posted by rdowell and 2 others to KEGG metabolism on Thu Apr 24 2008 at 19:47 UTC | info | related
 
KEGGanim: pathway animations for high-throughput data
biit.cs.ut.ee
KEGGanim is a novel web-based tool for visualizing experimental data in the context of biological pathways. KEGGanim produces animations or static images of KEGG pathways by overlaying public or user uploaded high-thourghput data over handdrawn KEGG pathway maps.
Posted by marpin to KEGG pathway data analysis visualization on Wed Feb 20 2008 at 02:27 UTC | info | related
 
KEGGanim: pathway animations for high-throughput data.
Priit Adler et al.
Bioinformatics (Oxford, England) 24 (4), btm581v1-590 (01 Dec 2007)
info:pmid/18056068 | info:doi/10.1093/bioinformatics/btm581
Posted by dswan and 1 other to KEGG pathway on Mon Dec 03 2007 at 09:51 UTC | info | related
 
Prediction of missing enzyme genes in a bacterial metabolic network.
FEBS Journal 274 (9), 2262 (2007)
info:doi/10.1111/j.1742-4658.2007.05763.x
Interesting paper - could use Biominer to do similar things
Posted by adamreid to KEGG metabolic networks BioMiner on Fri Nov 16 2007 at 14:03 UTC | info | related
 
KEGG Primer: An Introduction to Pathway Analysis Using KEGG : Bioinformatics Primer : Pathway Interaction Database
pid.nci.nih.gov
KEGG, which stands for Kyoto Encyclopedia of Genes and Genomes, has become a major resource for pathway analysis and contains a wealth of data associated with pathways, genes, genomes, chemical compounds and reaction information, in addition to links to outside resources such as PubMed (Kanehisa et al., 2006). This primer will focus on the PATHWAY data resource in KEGG. We will describe how to browse and search the pathways that are currently available. We also discuss the KEGG Automatic Annotation Server (KAAS) service, which overlays genes onto pathways. Additionally, we introduce the KegArray tool for exploring the pathways for expressed genes based on microarray data.
Posted by lindenb to KEGG toread tutorial systems biology on Wed Oct 10 2007 at 06:33 UTC | info | related
 
KEGG: Kyoto Encyclopedia of Genes and Genomes.
H Ogata et al.
Nucleic acids research 27 (1), 29-34 (01 Jan 1999)
info:pmid/9847135
Posted by makio323 and 1 other to KEGG on Mon Jun 18 2007 at 23:49 UTC | info | related

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